BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravaind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 1LFU M.musculus DNA-binding protein
         (82 letters)

Database: nr27062005 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|57111599|ref|XP_545786.1| PREDICTED: similar to Pre-B-cell le...   168   3e-41
gi|57094790|ref|XP_538847.1| PREDICTED: similar to notch4 [Canis...   165   4e-40
gi|339895|gb|AAA36764.1| E2A/PRL fusion protein                       164   6e-40
gi|47220028|emb|CAG12176.1| unnamed protein product [Tetraodon n...   159   3e-38
gi|46048897|ref|NP_990077.1| PBX1A protein [Gallus gallus] >gnl|...   155   2e-37
gi|34365779|ref|NP_899198.1| pre B-cell leukemia transcription f...   155   3e-37
gi|50795297|ref|XP_423764.1| PREDICTED: similar to pre-B-cell le...   153   1e-36
gi|55588664|ref|XP_513961.1| PREDICTED: hypothetical protein XP_...   152   2e-36
gi|30584839|gb|AAP36672.1| Homo sapiens pre-B-cell leukemia tran...   152   2e-36
gi|30582249|gb|AAP35351.1| pre-B-cell leukemia transcription fac...   152   3e-36
gi|8096557|dbj|BAA96136.1| PBX1B [Gallus gallus]                      151   4e-36
gi|47507441|gb|AAH71048.1| MGC83856 protein [Xenopus laevis]          151   6e-36
gi|107390|pir||B33061 homeotic protein prl - human >gnl|BL_ORD_I...   151   7e-36
gi|61868690|ref|XP_612645.1| PREDICTED: similar to Pre-B-cell le...   151   7e-36
gi|7160800|emb|CAB76458.1| Pbx4/Lazarus homeodomain protein [Dan...   150   7e-36
gi|47228232|emb|CAG07627.1| unnamed protein product [Tetraodon n...   149   2e-35
gi|56388825|gb|AAH87615.1| Pre B-cell leukemia transcription fac...   149   2e-35
gi|8567384|ref|NP_059491.1| pre B-cell leukemia transcription fa...   149   2e-35
gi|50657366|ref|NP_001002828.1| pre-B-cell leukemia transcriptio...   149   2e-35
gi|20302859|gb|AAM18914.1| pre-B-cell leukemia transcription fac...   149   3e-35

>gi|57111599|ref|XP_545786.1| PREDICTED: similar to Pre-B-cell
           leukemia transcription factor-1 (Homeobox protein PBX1)
           [Canis familiaris]
          Length = 1618

 Score =  168 bits (426), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 903 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 962

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 963 KNIGKFQEEANIYAAKTAVTA 983


>gi|57094790|ref|XP_538847.1| PREDICTED: similar to notch4 [Canis
            familiaris]
          Length = 2224

 Score =  165 bits (417), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2    ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
            ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 2000 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 2059

Query: 62   KNIGKFQEEANIYAAKTAVT 81
            KNIGKFQEEANIYA KTAV+
Sbjct: 2060 KNIGKFQEEANIYAVKTAVS 2079


>gi|339895|gb|AAA36764.1| E2A/PRL fusion protein
          Length = 550

 Score =  164 bits (415), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 353 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 412

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 413 KNIGKFQEEANIYAAKTAVTA 433


>gi|47220028|emb|CAG12176.1| unnamed protein product [Tetraodon
           nigroviridis]
          Length = 509

 Score =  159 bits (401), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/81 (93%), Positives = 78/81 (96%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 231 ARRKRRNFNKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 290

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEAN+YA KTAV A
Sbjct: 291 KNIGKFQEEANLYAVKTAVDA 311


>gi|46048897|ref|NP_990077.1| PBX1A protein [Gallus gallus]
 PBX1A [Gallus gallus]
          Length = 430

 Score =  155 bits (393), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|34365779|ref|NP_899198.1| pre B-cell leukemia transcription
           factor 1 isoform a [Mus musculus]
 PREDICTED: similar to Pre-B-cell leukemia transcription factor-1
           (Homeobox protein PBX1) [Rattus norvegicus]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 Pre B-cell leukemia transcription factor 1, isoform a [Mus
           musculus]
 Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
 PBX1 [Homo sapiens]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 PBX1a [Mus musculus]
 PBX1a
          Length = 430

 Score =  155 bits (392), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|50795297|ref|XP_423764.1| PREDICTED: similar to pre-B-cell
           leukemia transcription factor 3 [Gallus gallus]
          Length = 431

 Score =  153 bits (386), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/81 (93%), Positives = 79/81 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 238 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKGGITVSQVSNWFGNKRIRYK 297

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KN+GKFQEEANIYAAKTAV A
Sbjct: 298 KNMGKFQEEANIYAAKTAVDA 318


>gi|55588664|ref|XP_513961.1| PREDICTED: hypothetical protein
           XP_513961 [Pan troglodytes]
          Length = 351

 Score =  152 bits (385), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 128 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 187

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 188 KNIGKFQEEANIYAAKTAVTA 208


>gi|30584839|gb|AAP36672.1| Homo sapiens pre-B-cell leukemia
           transcription factor 1 [synthetic construct]
          Length = 348

 Score =  152 bits (385), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|30582249|gb|AAP35351.1| pre-B-cell leukemia transcription factor
           1 [Homo sapiens]
 pre B-cell leukemia transcription factor 1 isoform b [Mus musculus]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 PBX1b [Mus musculus]
 homeobox protein
          Length = 347

 Score =  152 bits (384), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|8096557|dbj|BAA96136.1| PBX1B [Gallus gallus]
          Length = 347

 Score =  151 bits (382), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|47507441|gb|AAH71048.1| MGC83856 protein [Xenopus laevis]
          Length = 445

 Score =  151 bits (381), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/80 (92%), Positives = 77/80 (96%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK  ITVSQVSNWFGNKRIRYK
Sbjct: 237 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK 296

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 297 KNIGKFQEEANIYAVKTAVS 316


>gi|107390|pir||B33061 homeotic protein prl - human
 homeobox-containing protein
          Length = 342

 Score =  151 bits (381), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 145 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 204

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 205 KNIGKFQEEANIYAAKTAVTA 225


>gi|61868690|ref|XP_612645.1| PREDICTED: similar to Pre-B-cell
           leukemia transcription factor-1 (Homeobox protein PBX1)
           [Bos taurus]
          Length = 333

 Score =  151 bits (381), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|7160800|emb|CAB76458.1| Pbx4/Lazarus homeodomain protein [Danio
           rerio]
 Pbx4 homeodomain protein [Danio rerio]
 pre-B-cell leukemia transcription factor 4 [Danio rerio]
          Length = 343

 Score =  150 bits (380), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/81 (93%), Positives = 78/81 (96%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 231 ARRKRRNFNKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 290

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEAN+YA KTAV A
Sbjct: 291 KNIGKFQEEANLYAVKTAVDA 311


>gi|47228232|emb|CAG07627.1| unnamed protein product [Tetraodon
           nigroviridis]
          Length = 338

 Score =  149 bits (377), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/78 (92%), Positives = 77/78 (98%)

Query: 5   KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYKKNI 64
           +RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITV+QVSNWFGNKRIRYKKNI
Sbjct: 144 QRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVAQVSNWFGNKRIRYKKNI 203

Query: 65  GKFQEEANIYAAKTAVTA 82
           GKFQEEAN+YAA+TAV+A
Sbjct: 204 GKFQEEANMYAARTAVSA 221


>gi|56388825|gb|AAH87615.1| Pre B-cell leukemia transcription factor
           2 [Mus musculus]
          Length = 430

 Score =  149 bits (377), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 244 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 303

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 304 KNIGKFQEEANIYAVKTAVS 323


>gi|8567384|ref|NP_059491.1| pre B-cell leukemia transcription
           factor 2 [Mus musculus]
 PBX2 [Mus musculus]
 Pre B-cell leukemia transcription factor 2 [Mus musculus]
 Pre B-cell leukemia transcription factor 2 [Mus musculus]
 Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
 PBX2 [Mus musculus]
          Length = 430

 Score =  149 bits (377), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 244 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 303

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 304 KNIGKFQEEANIYAVKTAVS 323


>gi|50657366|ref|NP_001002828.1| pre-B-cell leukemia transcription
           factor 2 [Rattus norvegicus]
 pre-B-cell leukemia transcription factor 2 [Rattus norvegicus]
          Length = 430

 Score =  149 bits (376), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 244 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 303

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 304 KNIGKFQEEANIYAVKTAVS 323


>gi|20302859|gb|AAM18914.1| pre-B-cell leukemia transcription factor
           1b [Xenopus laevis]
          Length = 347

 Score =  149 bits (375), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/81 (96%), Positives = 78/81 (96%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK  ITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCAITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAV A
Sbjct: 293 KNIGKFQEEANIYAAKTAVNA 313


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

gi|57111599|ref|XP_545786.1| PREDICTED: similar to Pre-B-cell le...   184   7e-46
gi|339895|gb|AAA36764.1| E2A/PRL fusion protein                       184   7e-46
gi|57094790|ref|XP_538847.1| PREDICTED: similar to notch4 [Canis...   181   4e-45
gi|47220028|emb|CAG12176.1| unnamed protein product [Tetraodon n...   180   1e-44
gi|47507441|gb|AAH71048.1| MGC83856 protein [Xenopus laevis]          173   1e-42
gi|50795297|ref|XP_423764.1| PREDICTED: similar to pre-B-cell le...   173   1e-42
gi|46048897|ref|NP_990077.1| PBX1A protein [Gallus gallus] >gnl|...   173   1e-42
gi|34365779|ref|NP_899198.1| pre B-cell leukemia transcription f...   172   2e-42
gi|56388825|gb|AAH87615.1| Pre B-cell leukemia transcription fac...   171   5e-42
gi|8567384|ref|NP_059491.1| pre B-cell leukemia transcription fa...   171   5e-42
gi|50657366|ref|NP_001002828.1| pre-B-cell leukemia transcriptio...   171   6e-42
gi|7160800|emb|CAB76458.1| Pbx4/Lazarus homeodomain protein [Dan...   170   7e-42
gi|47228232|emb|CAG07627.1| unnamed protein product [Tetraodon n...   170   1e-41
gi|7160798|emb|CAB76457.1| pbxy homeodomain protein [Danio rerio...   170   1e-41
gi|55626238|ref|XP_518378.1| PREDICTED: similar to Pre-B-cell le...   169   2e-41
gi|55588664|ref|XP_513961.1| PREDICTED: hypothetical protein XP_...   169   2e-41
gi|47207681|emb|CAF91499.1| unnamed protein product [Tetraodon n...   169   2e-41
gi|31228972|ref|XP_318146.1| ENSANGP00000020686 [Anopheles gambi...   169   2e-41
gi|7160792|emb|CAB76454.1| Pbx1a homeodomain protein [Danio reri...   169   2e-41
gi|35313|emb|CAA42503.1| homeobox protein [Homo sapiens]              169   2e-41

Sequences not found previously or not previously below threshold:

>gi|57111599|ref|XP_545786.1| PREDICTED: similar to Pre-B-cell
           leukemia transcription factor-1 (Homeobox protein PBX1)
           [Canis familiaris]
          Length = 1618

 Score =  184 bits (467), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 903 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 962

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 963 KNIGKFQEEANIYAAKTAVTA 983


>gi|339895|gb|AAA36764.1| E2A/PRL fusion protein
          Length = 550

 Score =  184 bits (467), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 353 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 412

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 413 KNIGKFQEEANIYAAKTAVTA 433


>gi|57094790|ref|XP_538847.1| PREDICTED: similar to notch4 [Canis
            familiaris]
          Length = 2224

 Score =  181 bits (460), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2    ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
            ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 2000 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 2059

Query: 62   KNIGKFQEEANIYAAKTAVT 81
            KNIGKFQEEANIYA KTAV+
Sbjct: 2060 KNIGKFQEEANIYAVKTAVS 2079


>gi|47220028|emb|CAG12176.1| unnamed protein product [Tetraodon
           nigroviridis]
          Length = 509

 Score =  180 bits (456), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/81 (93%), Positives = 78/81 (96%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 231 ARRKRRNFNKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 290

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEAN+YA KTAV A
Sbjct: 291 KNIGKFQEEANLYAVKTAVDA 311


>gi|47507441|gb|AAH71048.1| MGC83856 protein [Xenopus laevis]
          Length = 445

 Score =  173 bits (439), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/80 (92%), Positives = 77/80 (96%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK  ITVSQVSNWFGNKRIRYK
Sbjct: 237 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK 296

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 297 KNIGKFQEEANIYAVKTAVS 316


>gi|50795297|ref|XP_423764.1| PREDICTED: similar to pre-B-cell
           leukemia transcription factor 3 [Gallus gallus]
          Length = 431

 Score =  173 bits (439), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/81 (93%), Positives = 79/81 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 238 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKGGITVSQVSNWFGNKRIRYK 297

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KN+GKFQEEANIYAAKTAV A
Sbjct: 298 KNMGKFQEEANIYAAKTAVDA 318


>gi|46048897|ref|NP_990077.1| PBX1A protein [Gallus gallus]
 PBX1A [Gallus gallus]
          Length = 430

 Score =  173 bits (438), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|34365779|ref|NP_899198.1| pre B-cell leukemia transcription
           factor 1 isoform a [Mus musculus]
 PREDICTED: similar to Pre-B-cell leukemia transcription factor-1
           (Homeobox protein PBX1) [Rattus norvegicus]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 Pre B-cell leukemia transcription factor 1, isoform a [Mus
           musculus]
 Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
 Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1)
           (Homeobox protein PRL)
 PBX1 [Homo sapiens]
 pre-B-cell leukemia transcription factor 1 [Homo sapiens]
 PBX1a [Mus musculus]
 PBX1a
          Length = 430

 Score =  172 bits (437), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313


>gi|56388825|gb|AAH87615.1| Pre B-cell leukemia transcription factor
           2 [Mus musculus]
          Length = 430

 Score =  171 bits (434), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 244 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 303

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 304 KNIGKFQEEANIYAVKTAVS 323


>gi|8567384|ref|NP_059491.1| pre B-cell leukemia transcription
           factor 2 [Mus musculus]
 PBX2 [Mus musculus]
 Pre B-cell leukemia transcription factor 2 [Mus musculus]
 Pre B-cell leukemia transcription factor 2 [Mus musculus]
 Pre-B-cell leukemia transcription factor-2 (Homeobox protein PBX2)
 PBX2 [Mus musculus]
          Length = 430

 Score =  171 bits (433), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 244 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 303

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 304 KNIGKFQEEANIYAVKTAVS 323


>gi|50657366|ref|NP_001002828.1| pre-B-cell leukemia transcription
           factor 2 [Rattus norvegicus]
 pre-B-cell leukemia transcription factor 2 [Rattus norvegicus]
          Length = 430

 Score =  171 bits (433), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 244 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 303

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 304 KNIGKFQEEANIYAVKTAVS 323


>gi|7160800|emb|CAB76458.1| Pbx4/Lazarus homeodomain protein [Danio
           rerio]
 Pbx4 homeodomain protein [Danio rerio]
 pre-B-cell leukemia transcription factor 4 [Danio rerio]
          Length = 343

 Score =  170 bits (432), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/81 (93%), Positives = 78/81 (96%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 231 ARRKRRNFNKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 290

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEAN+YA KTAV A
Sbjct: 291 KNIGKFQEEANLYAVKTAVDA 311


>gi|47228232|emb|CAG07627.1| unnamed protein product [Tetraodon
           nigroviridis]
          Length = 338

 Score =  170 bits (431), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/78 (92%), Positives = 77/78 (98%)

Query: 5   KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYKKNI 64
           +RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITV+QVSNWFGNKRIRYKKNI
Sbjct: 144 QRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVAQVSNWFGNKRIRYKKNI 203

Query: 65  GKFQEEANIYAAKTAVTA 82
           GKFQEEAN+YAA+TAV+A
Sbjct: 204 GKFQEEANMYAARTAVSA 221


>gi|7160798|emb|CAB76457.1| pbxy homeodomain protein [Danio rerio]
 pre-B-cell leukemia transcription factor y [Danio rerio]
          Length = 403

 Score =  170 bits (431), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/81 (87%), Positives = 77/81 (95%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAK+  ITVSQVSNWFGNKRIRYK
Sbjct: 252 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKQCSITVSQVSNWFGNKRIRYK 311

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGK+QEEAN+YA KTA+ A
Sbjct: 312 KNIGKYQEEANLYAMKTALGA 332


>gi|55626238|ref|XP_518378.1| PREDICTED: similar to Pre-B-cell
           leukemia transcription factor-2 (Homeobox protein PBX2)
           (G17 protein) [Pan troglodytes]
          Length = 413

 Score =  169 bits (429), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 227 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 286

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 287 KNIGKFQEEANIYAVKTAVS 306


>gi|55588664|ref|XP_513961.1| PREDICTED: hypothetical protein
           XP_513961 [Pan troglodytes]
          Length = 351

 Score =  169 bits (429), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/81 (98%), Positives = 80/81 (98%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 128 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 187

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEANIYAAKTAVTA
Sbjct: 188 KNIGKFQEEANIYAAKTAVTA 208


>gi|47207681|emb|CAF91499.1| unnamed protein product [Tetraodon
           nigroviridis]
          Length = 382

 Score =  169 bits (429), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/81 (87%), Positives = 76/81 (93%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAK+  ITVSQVSNWFGNKRIRYK
Sbjct: 231 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKQCAITVSQVSNWFGNKRIRYK 290

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNI KFQEEAN+YA KTA+ A
Sbjct: 291 KNISKFQEEANLYAMKTALGA 311


>gi|31228972|ref|XP_318146.1| ENSANGP00000020686 [Anopheles gambiae
           str. PEST]
 ENSANGP00000020686 [Anopheles gambiae str. PEST]
          Length = 375

 Score =  169 bits (429), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/81 (88%), Positives = 76/81 (93%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQA+EILNEYFYSHLSNPYPSEEAKEELA+K GITVSQVSNWFGNKRIRYK
Sbjct: 239 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYK 298

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGK QEEAN+YAAK A  A
Sbjct: 299 KNIGKAQEEANLYAAKKAAGA 319


>gi|7160792|emb|CAB76454.1| Pbx1a homeodomain protein [Danio rerio]
 Pre-B-cell leukemia transcription factor 1a, isoform 1 [Danio
           rerio]
 pre-B-cell leukemia transcription factor 1a isoform 1 [Danio rerio]
          Length = 428

 Score =  169 bits (428), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/81 (92%), Positives = 77/81 (95%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKK  ITVSQVSNWFGNKRIRYK
Sbjct: 232 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK 291

Query: 62  KNIGKFQEEANIYAAKTAVTA 82
           KNIGKFQEEAN+YAA+TA  A
Sbjct: 292 KNIGKFQEEANMYAARTAANA 312


>gi|35313|emb|CAA42503.1| homeobox protein [Homo sapiens]
          Length = 430

 Score =  169 bits (428), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/80 (93%), Positives = 78/80 (97%)

Query: 2   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
           ARRKRRNF+KQATE+LNEYFYSHLSNPYPSEEAKEELAKK GITVSQVSNWFGNKRIRYK
Sbjct: 244 ARRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 303

Query: 62  KNIGKFQEEANIYAAKTAVT 81
           KNIGKFQEEANIYA KTAV+
Sbjct: 304 KNIGKFQEEANIYAVKTAVS 323


  Database: nr27062005
    Posted date:  Jul 21, 2005  1:35 PM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.308    0.147    0.452 

Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,555,443
Number of Sequences: 2540612
Number of extensions: 11149436
Number of successful extensions: 37418
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6500
Number of HSP's successfully gapped in prelim test: 3086
Number of HSP's that attempted gapping in prelim test: 30186
Number of HSP's gapped (non-prelim): 10183
length of query: 82
length of database: 863,360,394
effective HSP length: 53
effective length of query: 29
effective length of database: 728,707,958
effective search space: 21132530782
effective search space used: 21132530782
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.4 bits)
S2: 69 (31.1 bits)