BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 1LFU M.musculus DNA-binding protein (82 letters) Database: nr27062005 2,540,612 sequences; 863,360,394 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|28373541|pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Ext... 145 4e-34 gi|34365779|ref|NP_899198.1| pre B-cell leukemia transcription f... 141 6e-33 gi|30582249|gb|AAP35351.1| pre-B-cell leukemia transcription fac... 141 6e-33 gi|12805535|gb|AAH02244.1| Pbx1 protein [Mus musculus] 141 6e-33 gi|46048897|ref|NP_990077.1| PBX1A protein [Gallus gallus] >gnl|... 141 6e-33 gi|30584839|gb|AAP36672.1| Homo sapiens pre-B-cell leukemia tran... 141 6e-33 gi|57111599|ref|XP_545786.1| PREDICTED: similar to Pre-B-cell le... 141 6e-33 gi|61868690|ref|XP_612645.1| PREDICTED: similar to Pre-B-cell le... 141 6e-33 gi|55588664|ref|XP_513961.1| PREDICTED: hypothetical protein XP_... 141 6e-33 gi|61845502|ref|XP_586515.1| PREDICTED: similar to Pbx1 protein,... 141 6e-33 gi|107390|pir||B33061 homeotic protein prl - human >gnl|BL_ORD_I... 141 6e-33 gi|8096557|dbj|BAA96136.1| PBX1B [Gallus gallus] 141 6e-33 gi|339895|gb|AAA36764.1| E2A/PRL fusion protein 141 6e-33 gi|4558070|pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA ... 141 6e-33 gi|18149007|dbj|BAB83538.1| pre-B-cell leukemia transcription fa... 138 4e-32 gi|20302859|gb|AAM18914.1| pre-B-cell leukemia transcription fac... 137 1e-31 gi|57162414|emb|CAI40243.1| pre-B-cell leukemia transcription fa... 136 2e-31 gi|62644969|ref|XP_231158.3| PREDICTED: similar to PBX3a [Rattus... 136 2e-31 gi|57162416|emb|CAI40245.1| pre-B-cell leukemia transcription fa... 136 2e-31 gi|57162415|emb|CAI40244.1| pre-B-cell leukemia transcription fa... 136 2e-31 >gi|28373541|pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain Bound To Dna Length = 82 Score = 145 bits (365), Expect = 4e-34 Identities = 72/82 (87%), Positives = 72/82 (87%) Query: 1 MARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRY 60 MARRKRRNFNKQATEILNEYFYSHLSNPYPS SGITVSQVSNWFGNKRIRY Sbjct: 1 MARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRY 60 Query: 61 KKNIGKFQEEANIYAAKTAVTA 82 KKNIGKFQEEANIYAAKTAVTA Sbjct: 61 KKNIGKFQEEANIYAAKTAVTA 82 >gi|34365779|ref|NP_899198.1| pre B-cell leukemia transcription factor 1 isoform a [Mus musculus] PREDICTED: similar to Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1) [Rattus norvegicus] pre-B-cell leukemia transcription factor 1 [Homo sapiens] pre-B-cell leukemia transcription factor 1 [Homo sapiens] pre-B-cell leukemia transcription factor 1 [Homo sapiens] Pre B-cell leukemia transcription factor 1, isoform a [Mus musculus] Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1) Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1) (Homeobox protein PRL) PBX1 [Homo sapiens] pre-B-cell leukemia transcription factor 1 [Homo sapiens] PBX1a [Mus musculus] PBX1a Length = 430 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313 >gi|30582249|gb|AAP35351.1| pre-B-cell leukemia transcription factor 1 [Homo sapiens] pre B-cell leukemia transcription factor 1 isoform b [Mus musculus] pre-B-cell leukemia transcription factor 1 [Homo sapiens] pre-B-cell leukemia transcription factor 1 [Homo sapiens] PBX1b [Mus musculus] homeobox protein Length = 347 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313 >gi|12805535|gb|AAH02244.1| Pbx1 protein [Mus musculus] Length = 242 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 128 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 187 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 188 KNIGKFQEEANIYAAKTAVTA 208 >gi|46048897|ref|NP_990077.1| PBX1A protein [Gallus gallus] PBX1A [Gallus gallus] Length = 430 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313 >gi|30584839|gb|AAP36672.1| Homo sapiens pre-B-cell leukemia transcription factor 1 [synthetic construct] Length = 348 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313 >gi|57111599|ref|XP_545786.1| PREDICTED: similar to Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1) [Canis familiaris] Length = 1618 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 903 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 962 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 963 KNIGKFQEEANIYAAKTAVTA 983 >gi|61868690|ref|XP_612645.1| PREDICTED: similar to Pre-B-cell leukemia transcription factor-1 (Homeobox protein PBX1) [Bos taurus] Length = 333 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313 >gi|55588664|ref|XP_513961.1| PREDICTED: hypothetical protein XP_513961 [Pan troglodytes] Length = 351 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 128 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 187 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 188 KNIGKFQEEANIYAAKTAVTA 208 >gi|61845502|ref|XP_586515.1| PREDICTED: similar to Pbx1 protein, partial [Bos taurus] Length = 185 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 85 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 144 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 145 KNIGKFQEEANIYAAKTAVTA 165 >gi|107390|pir||B33061 homeotic protein prl - human homeobox-containing protein Length = 342 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 145 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 204 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 205 KNIGKFQEEANIYAAKTAVTA 225 >gi|8096557|dbj|BAA96136.1| PBX1B [Gallus gallus] Length = 347 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 292 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 293 KNIGKFQEEANIYAAKTAVTA 313 >gi|339895|gb|AAA36764.1| E2A/PRL fusion protein Length = 550 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 353 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 412 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 413 KNIGKFQEEANIYAAKTAVTA 433 >gi|4558070|pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 87 Score = 141 bits (355), Expect = 6e-33 Identities = 70/81 (86%), Positives = 70/81 (86%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAVTA Sbjct: 61 KNIGKFQEEANIYAAKTAVTA 81 >gi|18149007|dbj|BAB83538.1| pre-B-cell leukemia transcription factor 1 [Macaca fascicularis] Length = 325 Score = 138 bits (348), Expect = 4e-32 Identities = 69/81 (85%), Positives = 69/81 (85%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS GITVSQVSNWFGNKRIRYK Sbjct: 128 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 187 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQE ANIYAAKTAVTA Sbjct: 188 KNIGKFQEGANIYAAKTAVTA 208 >gi|20302859|gb|AAM18914.1| pre-B-cell leukemia transcription factor 1b [Xenopus laevis] Length = 347 Score = 137 bits (344), Expect = 1e-31 Identities = 68/81 (83%), Positives = 68/81 (83%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNFNKQATEILNEYFYSHLSNPYPS ITVSQVSNWFGNKRIRYK Sbjct: 233 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCAITVSQVSNWFGNKRIRYK 292 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEANIYAAKTAV A Sbjct: 293 KNIGKFQEEANIYAAKTAVNA 313 >gi|57162414|emb|CAI40243.1| pre-B-cell leukemia transcription factor 3 [Homo sapiens] pre-B-cell leukemia transcription factor 3 [Homo sapiens] homeobox protein [Homo sapiens] pre-B-cell leukemia transcription factor 3 [Homo sapiens] Pre-B-cell leukemia transcription factor-3 (Homeobox protein PBX3) Pre-B-cell leukemia transcription factor 3 [Homo sapiens] Length = 434 Score = 136 bits (342), Expect = 2e-31 Identities = 67/81 (82%), Positives = 69/81 (85%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNF+KQATEILNEYFYSHLSNPYPS ITVSQVSNWFGNKRIRYK Sbjct: 235 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK 294 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEAN+YAAKTAVTA Sbjct: 295 KNIGKFQEEANLYAAKTAVTA 315 >gi|62644969|ref|XP_231158.3| PREDICTED: similar to PBX3a [Rattus norvegicus] Length = 580 Score = 136 bits (342), Expect = 2e-31 Identities = 67/81 (82%), Positives = 69/81 (85%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNF+KQATEILNEYFYSHLSNPYPS ITVSQVSNWFGNKRIRYK Sbjct: 381 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK 440 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEAN+YAAKTAVTA Sbjct: 441 KNIGKFQEEANLYAAKTAVTA 461 >gi|57162416|emb|CAI40245.1| pre-B-cell leukemia transcription factor 3 [Homo sapiens] Length = 253 Score = 136 bits (342), Expect = 2e-31 Identities = 67/81 (82%), Positives = 69/81 (85%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNF+KQATEILNEYFYSHLSNPYPS ITVSQVSNWFGNKRIRYK Sbjct: 54 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK 113 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEAN+YAAKTAVTA Sbjct: 114 KNIGKFQEEANLYAAKTAVTA 134 >gi|57162415|emb|CAI40244.1| pre-B-cell leukemia transcription factor 3 [Homo sapiens] pre-B-cell leukemia transcription factor 3D [Homo sapiens] Length = 170 Score = 136 bits (342), Expect = 2e-31 Identities = 67/81 (82%), Positives = 69/81 (85%) Query: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSXXXXXXXXXXSGITVSQVSNWFGNKRIRYK 61 ARRKRRNF+KQATEILNEYFYSHLSNPYPS ITVSQVSNWFGNKRIRYK Sbjct: 54 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKKCSITVSQVSNWFGNKRIRYK 113 Query: 62 KNIGKFQEEANIYAAKTAVTA 82 KNIGKFQEEAN+YAAKTAVTA Sbjct: 114 KNIGKFQEEANLYAAKTAVTA 134 Database: nr27062005 Posted date: Jul 21, 2005 1:35 PM Number of letters in database: 863,360,394 Number of sequences in database: 2,540,612 Lambda K H 0.316 0.128 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,424,244 Number of Sequences: 2540612 Number of extensions: 2730725 Number of successful extensions: 10125 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 939 Number of HSP's successfully gapped in prelim test: 216 Number of HSP's that attempted gapping in prelim test: 9138 Number of HSP's gapped (non-prelim): 1175 length of query: 82 length of database: 863,360,394 effective HSP length: 53 effective length of query: 29 effective length of database: 728,707,958 effective search space: 21132530782 effective search space used: 21132530782 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 69 (31.2 bits)